STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0632KEGG: dal:Dalk_0341 hypothetical protein. (739 aa)    
Predicted Functional Partners:
Plim_0631
PFAM: pseudouridine synthase; KEGG: sfu:Sfum_1153 pseudouridine synthase.
       0.773
Plim_0633
Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; KEGG: pna:Pnap_3481 sugar transferase.
       0.517
Plim_0635
PFAM: glycosyl transferase group 1; KEGG: sat:SYN_02667 alpha-D-QuiNAc alpha-1,3- galactosyltransferase.
  
    0.440
Plim_0634
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short- chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: sat:SYN_02668 UDP-glucose 4-epimerase.
       0.435
Plim_0636
PFAM: Methyltransferase type 11; KEGG: mca:MCA2546 hypothetical protein.
       0.435
Plim_1164
KEGG: aba:Acid345_3256 magnesium protoporphyrin chelatase, putative.
  
 
 0.415
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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