STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0639PFAM: polysaccharide biosynthesis protein; KEGG: oan:Oant_1020 polysaccharide biosynthesis protein. (458 aa)    
Predicted Functional Partners:
Plim_1527
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.874
Plim_3582
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.874
Plim_3736
Nucleotide sugar dehydrogenase; KEGG: HNRNPUL2, HNRPUL2; heterogeneous nuclear ribonucleoprotein U-like 2.
  
  
 0.874
Plim_3248
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.871
Plim_0638
Hypothetical protein; KEGG: SLC7A7; solute carrier family 7 (cationic amino acid transporter, y+ system), member 7.
  
  
 0.789
Plim_0637
PFAM: glycosyl transferase group 1; KEGG: noc:Noc_2479 glycosyl transferase, group 1.
  
    0.669
Plim_0635
PFAM: glycosyl transferase group 1; KEGG: sat:SYN_02667 alpha-D-QuiNAc alpha-1,3- galactosyltransferase.
 
    0.659
Plim_0633
Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; KEGG: pna:Pnap_3481 sugar transferase.
  
  
 0.657
Plim_4111
Capsular exopolysaccharide family.
  
  
 0.603
Plim_3874
Capsular exopolysaccharide family; KEGG: proteophosphoglycan ppg3.
  
  
 0.602
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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