STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0646SMART: metal-dependent phosphohydrolase HD region; KEGG: bte:BTH_II2048 hypothetical protein. (196 aa)    
Predicted Functional Partners:
Plim_3627
Phosphonoacetaldehyde hydrolase; Involved in phosphonate degradation.
 
    0.750
Plim_0101
TIGRFAM: FAD dependent oxidoreductase TIGR03364; PFAM: FAD dependent oxidoreductase; KEGG: pfl:PFL_5887 hypothetical protein.
 
     0.728
Plim_1638
PFAM: Phytanoyl-CoA dioxygenase; KEGG: har:HEAR3315 putative deoxygenases.
 
     0.682
Plim_0673
PFAM: Phytanoyl-CoA dioxygenase; KEGG: sus:Acid_3663 phytanoyl-CoA dioxygenase.
 
     0.614
Plim_1902
KEGG: cak:Caul_2985 hypothetical protein.
 
     0.528
Plim_2250
PFAM: amidohydrolase 2; KEGG: smd:Smed_4981 amidohydrolase 2.
  
     0.415
Plim_2265
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: bbt:BBta_7152 adenylate/guanylate cyclase.
 
     0.415
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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