STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0669TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: scl:sce8113 cation efflux system protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1092 aa)    
Predicted Functional Partners:
Plim_0670
KEGG: noc:Noc_0152 secretion protein HlyD.
 
 
 0.888
Plim_1584
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dar:Daro_2627 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.830
Plim_1582
PFAM: outer membrane efflux protein; KEGG: bpm:BURPS1710b_A0033 heavy metal resistance protein CzcC.
 
  
 0.673
Plim_0558
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: scl:sce1627 RND family efflux transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.648
Plim_0668
KEGG: mch:Mchl_3057 hypothetical protein.
       0.544
Plim_0671
Hypothetical protein.
       0.439
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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