STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0673PFAM: Phytanoyl-CoA dioxygenase; KEGG: sus:Acid_3663 phytanoyl-CoA dioxygenase. (280 aa)    
Predicted Functional Partners:
Plim_0670
KEGG: noc:Noc_0152 secretion protein HlyD.
 
     0.616
Plim_0646
SMART: metal-dependent phosphohydrolase HD region; KEGG: bte:BTH_II2048 hypothetical protein.
 
     0.614
Plim_0674
TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: mxa:MXAN_4688 single-stranded-DNA-specific exonuclease RecJ.
       0.464
Plim_3329
Conserved hypothetical protein.
  
     0.464
Plim_0982
PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: acr:Acry_1741 pyrrolo-quinoline quinone.
  
     0.439
Plim_1194
PFAM: peptidase M41; KEGG: gur:Gura_0348 hypothetical protein.
  
     0.436
Plim_0672
PFAM: 3'-5' exonuclease; HRDC domain protein; SMART: 3'-5' exonuclease; HRDC domain protein; KEGG: rce:RC1_1541 ribonuclease D, putative.
       0.429
Plim_0144
Coproporphyrinogen dehydrogenase; KEGG: rpc:RPC_1626 putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
   
 0.411
Plim_2943
Pyrrolo-quinoline quinone.
  
     0.407
Plim_3173
Beta-lactamase domain protein.
  
     0.407
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.