STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0677PFAM: polysaccharide deacetylase; KEGG: cps:CPS_5022 polysaccharide deacetylase family protein. (337 aa)    
Predicted Functional Partners:
Plim_3885
O-antigen polymerase; KEGG: proteophosphoglycan ppg4.
 
   
 0.668
Plim_3877
Glycosyl transferase family 2; KEGG: hypothetical protein LOC100150481.
 
  
 0.576
Plim_3880
Glycosyl transferase group 1; KEGG: proteophosphoglycan 5.
  
     0.555
Plim_3883
Glycosyl transferase group 1; KEGG: proteophosphoglycan ppg4.
     0.541
Plim_1867
Hypothetical protein; KEGG: lch:Lcho_1179 cellulose biosynthesis protein CelD.
 
     0.525
Plim_3884
Hypothetical protein; KEGG: proteophosphoglycan ppg4.
 
     0.514
Plim_1055
PFAM: glycosyl transferase family 2; Methyltransferase type 12; Methyltransferase type 11; TPR repeat-containing protein; Methionine biosynthesis MetW protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gbm:Gbem_3740 glycosyl transferase family 2.
  
  
 0.498
Plim_1843
KEGG: nar:Saro_1066 hypothetical protein.
 
     0.469
Plim_3669
Polysaccharide biosynthesis protein.
 
   
 0.463
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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