Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_0685TIGRFAM: conserved repeat domain protein; KEGG: dal:Dalk_0072 conserved repeat domain protein. (951 aa)    
Predicted Functional Partners:
Plim_0641
KEGG: SNF2 superfamily protein; Belongs to the bacterial secretin family.
 
     0.634
Plim_1543
KEGG: hypothetical protein; K03785 3-dehydroquinate dehydratase I.
  
     0.567
Plim_0727
KEGG: aba:Acid345_2357 hypothetical protein.
  
     0.531
Plim_2824
Protein of unknown function DUF1559.
  
     0.528
Plim_0686
Hypothetical protein.
       0.511
Plim_3847
Glycoside hydrolase family 10.
  
     0.506
Plim_0542
PFAM: metallophosphoesterase; KEGG: hypothetical protein.
  
     0.491
Plim_4027
UTP--glucose-1-phosphate uridylyltransferase.
  
     0.489
Plim_3639
Type II secretory pathway component PulK-like protein; KEGG: hypothetical protein.
  
     0.474
Plim_0830
PFAM: protein of unknown function UPF0153; KEGG: bba:Bd0554 hypothetical protein.
  
     0.473
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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