Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Plim_0697PFAM: protein of unknown function DUF1559; KEGG: sus:Acid_5705 Tfp pilus assembly protein PilE- like protein. (366 aa)    
Predicted Functional Partners:
Plim_0076
TIGRFAM: type IV pilus assembly protein PilM; KEGG: afw:Anae109_0686 type IV pilus assembly protein PilM.
  
     0.651
Plim_3351
Hypothetical protein.
  
     0.584
Plim_0058
KEGG: mxa:MXAN_5780 putative efflux ABC transporter, permease protein PilI.
  
     0.504
Plim_0696
Hypothetical protein.
       0.497
Plim_2454
Hypothetical protein; KEGG: sus:Acid_3622 glycosyl transferase family protein.
  
     0.419
Plim_0727
KEGG: aba:Acid345_2357 hypothetical protein.
  
     0.418
Plim_0698
Hypothetical protein; KEGG: GF22324 gene product from transcript GF22324- RA.
       0.414
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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