STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0702PFAM: Aldose 1-epimerase; KEGG: bsu:BSU18360 hypothetical protein. (318 aa)    
Predicted Functional Partners:
Plim_1388
PFAM: ROK family protein; KEGG: bcr:BCAH187_A4396 glucokinase.
 
  
 0.915
Plim_0758
PFAM: ROK family protein; KEGG: scl:sce0674 polyphosphate-glucose phosphotransferase.
    
 0.903
Plim_2404
PFAM: ROK family protein; KEGG: ftn:FTN_0618 ROK family protein.
    
 0.903
Plim_2884
Haloacid dehalogenase domain protein hydrolase; KEGG: low complexity, serine-rich orf; weak similarity to S. cerevisiae MTL1 mechanosensor of cell wall stress.
   
 
  0.901
Plim_3008
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
     
  0.900
Plim_0703
Hypothetical protein.
       0.773
Plim_0704
KEGG: scl:sce7998 hypothetical protein.
       0.555
Plim_0701
PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: dal:Dalk_0340 two component, sigma54 specific, transcriptional regulator, Fis family.
       0.550
Plim_1971
KEGG: sus:Acid_4361 galactose-1-phosphate uridylyltransferase.
  
 
 0.468
Plim_3319
Similar to plant photosystem II stability/assembly factor.
  
     0.451
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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