STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0713PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; sulfatase; KEGG: sus:Acid_3473 type I phosphodiesterase/nucleotide pyrophosphatase. (496 aa)    
Predicted Functional Partners:
Plim_0714
TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; KEGG: dal:Dalk_0550 riboflavin biosynthesis protein RibF.
       0.547
Plim_2631
UbiA prenyltransferase.
 
     0.522
Plim_1797
PFAM: Myo-inositol-1-phosphate synthase GAPDH domain protein; Myo-inositol-1-phosphate synthase; KEGG: sfu:Sfum_1982 inositol-3-phosphate synthase.
 
     0.474
Plim_0712
KEGG: pat:Patl_1161 hypothetical protein; Belongs to the UPF0502 family.
 
     0.472
Plim_1549
PFAM: TatD-related deoxyribonuclease; KEGG: cvi:CV_2836 hypothetical protein.
 
   
 0.460
Plim_2668
Hypothetical protein.
  
     0.457
Plim_1151
PFAM: protein of unknown function DUF1549; WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: sus:Acid_5709 hypothetical protein.
  
 
   0.453
Plim_1791
PFAM: NHL repeat containing protein; KEGG: sus:Acid_1144 NHL repeat-containing protein.
  
     0.442
Plim_3643
Conserved hypothetical protein.
  
     0.418
Plim_3899
Peptidase M28.
  
     0.410
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.