STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0726KEGG: lip:LI1093 outer membrane protein and related peptidoglycan-associated (LipO)proteins. (496 aa)    
Predicted Functional Partners:
Plim_0727
KEGG: aba:Acid345_2357 hypothetical protein.
  
 
 0.906
Plim_2365
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: rty:RT0150 outer membrane protein Omp1.
  
 
 0.905
Plim_0834
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pfo:Pfl01_1980 PpiC-type peptidyl-prolyl cis- trans isomerase.
  
 
 0.809
Plim_2735
PpiC-type peptidyl-prolyl cis-trans isomerase.
  
 
 0.809
Plim_3331
PpiC-type peptidyl-prolyl cis-trans isomerase.
  
 
 0.809
Plim_3747
Peptidylprolyl isomerase FKBP-type; KEGG: hypothetical protein.
   
 
 0.805
Plim_0386
PFAM: protein of unknown function DUF1597; KEGG: mca:MCA2112 hypothetical protein.
   
 
 0.746
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.625
Plim_3729
WD40 domain protein beta Propeller.
  
  
 0.549
Plim_4022
Conserved hypothetical protein.
  
  
 0.549
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.