STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0731SMART: nuclear protein SET; SET-related domain protein; KEGG: similar to nuclear receptor binding SET domain protein 1 isoform b; K11424 histone-lysine N- methyltransferase NSD1/2. (161 aa)    
Predicted Functional Partners:
Plim_0602
PFAM: RNA polymerase alpha subunit domain protein; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dol:Dole_1087 TPR repeat-containing protein.
   
 0.957
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 0.955
Plim_3500
Histone deacetylase.
  
 0.943
Plim_0884
KEGG: Hypothetical protein CBG09456.
    
 0.761
Plim_1883
KEGG: pca:Pcar_1476 hypothetical protein.
    
 0.761
Plim_2530
PFAM: Ankyrin; SMART: Ankyrin; KEGG: hypothetical protein.
    
 0.761
Plim_2537
KEGG: pha:PSHAa0332 hypothetical protein.
    
 0.761
Plim_3617
Ankyrin.
    
 0.761
Plim_1157
PFAM: alpha-2-macroglobulin domain protein; alpha-2- macroglobulin domain protein 2; KEGG: dal:Dalk_1584 alpha-2-macroglobulin domain protein.
    
  0.737
Plim_1515
PFAM: Silent information regulator protein Sir2; KEGG: pfl:PFL_2453 NAD-dependent deacetylase.
  
 
 0.695
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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