STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0734PFAM: protein of unknown function DUF820; KEGG: mrd:Mrad2831_3531 hypothetical protein. (185 aa)    
Predicted Functional Partners:
Plim_0322
PFAM: protein of unknown function DUF820.
  
     0.742
Plim_2196
PFAM: Abortive infection protein; KEGG: predicted protein.
  
     0.565
rimO
MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.496
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
       0.462
Plim_3404
Hypothetical protein.
  
     0.460
Plim_2029
Hypothetical protein; KEGG: bca:BCE_A0190 cytochrome c biogenesis protein, putative.
  
     0.433
Plim_0058
KEGG: mxa:MXAN_5780 putative efflux ABC transporter, permease protein PilI.
  
     0.432
Plim_1772
PFAM: ATP-sulfurylase; KEGG: sulfate adenylyltransferase; K00958 sulfate adenylyltransferase.
  
     0.429
Plim_1317
PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: bte:BTH_I0513 FHA domain-containing protein.
  
     0.414
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.