STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0741PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce0179 carbohydrate ABC transporter. (650 aa)    
Predicted Functional Partners:
Plim_1116
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bid:Bind_2113 ABC transporter related.
 
    
0.902
Plim_2065
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb2093 ABC-type transport system involved in resistance to organic solvents.
    
0.852
Plim_0740
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce0180 carbohydrate ABC transporter.
 
    
0.821
Plim_0462
TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: Beta-ketoacyl synthase; KR domain protein; Acyl transferase; short-chain dehydrogenase/reductase SDR; KEGG: gur:Gura_2012 erythronolide synthase.
   
 0.679
Plim_2026
Toxin secretion ABC transporter ATP-binding protein; KEGG: mfa:Mfla_2223 ABC transporter related.
   
   0.608
Plim_0742
Hypothetical protein.
       0.565
Plim_2333
PFAM: Heat shock protein 70; KEGG: bca:BCE_1142 DnaK protein, truncation.
  
  0.519
Plim_0743
KEGG: atc:AGR_C_4472 hypothetical protein.
 
     0.466
Plim_1501
PFAM: Heat shock protein 70; KEGG: bca:BCE_1142 DnaK protein, truncation.
  
  0.445
Plim_1055
PFAM: glycosyl transferase family 2; Methyltransferase type 12; Methyltransferase type 11; TPR repeat-containing protein; Methionine biosynthesis MetW protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gbm:Gbem_3740 glycosyl transferase family 2.
  
 0.439
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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