STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Plim_0752PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: GA18675 gene product from transcript GA18675- RA; K00624 carnitine O-acetyltransferase. (318 aa)    
Predicted Functional Partners:
Plim_3275
PAS sensor protein.
  
  
 0.839
Plim_2762
PAS sensor protein.
  
  
 0.780
Plim_3682
Flagellar basal body FlaE domain protein.
   
   0.779
Plim_2161
PFAM: Stage II sporulation E family protein; Forkhead-associated protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; Forkhead-associated protein; GAF domain protein; KEGG: sus:Acid_3432 serine phosphatase.
  
   0.702
Plim_3218
Stage II sporulation E family protein.
  
   0.702
Plim_0678
Ammonium transporter; KEGG: pla:Plav_1427 integral membrane sensor signal transduction histidine kinase; TIGRFAM: ammonium transporter; PAS sensor protein; PFAM: Rh family protein/ammonium transporter; ATP- binding region ATPase domain protein; Hpt domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein.
  
  
 0.700
Plim_2329
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: scl:sce7775 hypothetical protein.
  
 
 0.658
Plim_3703
Response regulator receiver.
  
 
 0.651
Plim_2705
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.644
Plim_3954
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.644
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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