Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0760PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: WD40 repeat. (370 aa)    
Predicted Functional Partners:
Plim_1451
PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: sus:Acid_5038 WD-40 repeat-containing protein.
  
 
   0.777
Plim_1263
PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: scl:sce8391 WD repeat-containing protein.
  
     0.775
Plim_2401
PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: sus:Acid_5038 WD-40 repeat-containing protein.
  
     0.775
Plim_1729
PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: hypothetical protein.
  
     0.774
Plim_2887
PBS lyase HEAT domain protein repeat-containing protein; KEGG: similar to ABI gene family, member 3 (NESH) binding protein.
  
    0.649
Plim_0602
PFAM: RNA polymerase alpha subunit domain protein; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dol:Dole_1087 TPR repeat-containing protein.
   
  0.618
Plim_2146
PFAM: Anti-sigma-28 factor FlgM family protein.
  
   0.611
Plim_2357
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mno:Mnod_2951 peptidase C14 caspase catalytic subunit P20.
  
 
  0.495
Plim_3500
Histone deacetylase.
    
  0.476
rplC
Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
  
 
  0.464
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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