STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0768PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce0659 sodium ABC transporter ATP- binding protein. (255 aa)    
Predicted Functional Partners:
Plim_0769
PFAM: Abortive infection protein; KEGG: scl:sce0660 putative ABC transporter sodium permease.
 
 
 0.983
Plim_3144
Abortive infection protein.
 
 
 0.937
Plim_3143
ABC transporter related protein.
  
  
 
0.911
Plim_2065
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb2093 ABC-type transport system involved in resistance to organic solvents.
    
0.714
Plim_1001
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: glo:Glov_0231 ABC transporter related.
  
     0.607
Plim_2108
PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mmw:Mmwyl1_4145 ATPase central domain- containing protein.
  
     0.598
Plim_2519
PFAM: AAA ATPase central domain protein; KEGG: AAA family ATPase, putative.
  
 
   0.571
Plim_2203
KEGG: dal:Dalk_1262 ABC-type uncharacterized transport system involved in gliding motility, auxiliary component.
  
 
 0.526
Plim_4114
ABC-2 type transporter.
 
  
 0.492
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.486
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.