STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0777Hypothetical protein; KEGG: sus:Acid_1077 alpha/beta hydrolase domain- containing protein. (310 aa)    
Predicted Functional Partners:
Plim_3151
Protein of unknown function DUF303 acetylesterase putative; KEGG: proteophosphoglycan 5.
  
     0.760
Plim_1449
KEGG: sus:Acid_5040 hypothetical protein.
  
     0.749
Plim_2416
Hypothetical protein; KEGG: sus:Acid_2651 putative O-antigen related protein.
  
     0.736
Plim_1450
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5039 hypothetical protein.
  
     0.733
Plim_0883
KEGG: sus:Acid_5331 hypothetical protein.
  
     0.731
Plim_1628
KEGG: sus:Acid_5538 hypothetical protein.
 
     0.711
Plim_0524
TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ilo:IL2423 DNA-directed RNA polymerase specialized sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.687
Plim_4048
Cycloartenol synthase-like protein.
  
     0.684
Plim_4094
Protein of unknown function DUF1549.
  
     0.660
Plim_2720
Lipolytic protein G-D-S-L family.
  
     0.650
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.