STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0779PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce4029 ribose ABC transporter ATP- binding protein. (528 aa)    
Predicted Functional Partners:
Plim_0780
PFAM: inner-membrane translocator; KEGG: scl:sce4028 ribose ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 0.999
Plim_0778
KEGG: scl:sce4030 ribose ABC transporter periplasmic-binding protein.
 
 0.998
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
   0.836
Plim_2308
PFAM: inner-membrane translocator; KEGG: ade:Adeh_4259 ABC branched-chain amino acid transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family.
    
 0.826
Plim_2334
PFAM: PfkB domain protein; KEGG: gsu:GSU0692 carbohydrate kinase.
 
  
 0.558
Plim_1758
PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: nar:Saro_1048 DeoR family transcriptional regulator.
 
   
 0.500
Plim_0781
Hypothetical protein; KEGG: ecf:ECH74115_0831 putative glutamate mutase MutL.
       0.444
Plim_0148
PFAM: carbon starvation protein CstA; KEGG: scl:sce6207 carbon starvation protein A.
   
  
 0.429
pheS
TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: shl:Shal_1812 phenylalanyl-tRNA synthetase subunit alpha; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
    
   0.418
Plim_1998
PFAM: PfkB domain protein; KEGG: aba:Acid345_1054 sugar kinase, ribokinase family.
 
  
 0.413
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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