STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Plim_0780PFAM: inner-membrane translocator; KEGG: scl:sce4028 ribose ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. (328 aa)    
Predicted Functional Partners:
Plim_0779
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce4029 ribose ABC transporter ATP- binding protein.
 0.999
Plim_0778
KEGG: scl:sce4030 ribose ABC transporter periplasmic-binding protein.
 
 0.998
Plim_2334
PFAM: PfkB domain protein; KEGG: gsu:GSU0692 carbohydrate kinase.
 
  
 0.600
Plim_0148
PFAM: carbon starvation protein CstA; KEGG: scl:sce6207 carbon starvation protein A.
   
    0.527
Plim_0774
PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: hiq:CGSHiGG_09180 xylose operon regulatory protein.
 
  
 0.481
Plim_0781
Hypothetical protein; KEGG: ecf:ECH74115_0831 putative glutamate mutase MutL.
       0.444
Plim_1758
PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: nar:Saro_1048 DeoR family transcriptional regulator.
 
   
 0.436
Plim_2801
Helix-turn-helix- domain containing protein AraC type.
  
  
 0.413
Plim_3035
Helix-turn-helix- domain containing protein AraC type; KEGG: proteophosphoglycan 5.
  
  
 0.413
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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