STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0784PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: dol:Dole_0148 transglutaminase domain- containing protein. (525 aa)    
Predicted Functional Partners:
Plim_4208
Tetratricopeptide TPR_2 repeat protein.
  
     0.649
Plim_0839
ATPase-like protein involved in DNA repair; KEGG: liver stage antigen.
  
     0.623
Plim_1495
PFAM: protein of unknown function DUF404; protein of unknown function DUF403; protein of unknown function DUF407; KEGG: dar:Daro_3009 hypothetical protein.
 
    0.615
Plim_4194
Tetratricopeptide TPR_2 repeat protein.
  
     0.584
Plim_3628
FG-GAP repeat protein.
  
     0.529
Plim_1666
PFAM: isochorismatase hydrolase; KEGG: sus:Acid_1892 isochorismatase hydrolase.
  
     0.494
Plim_3635
Conserved hypothetical protein.
  
     0.483
Plim_0820
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bcs:BCAN_B0031 hypothetical protein.
  
     0.472
Plim_1416
PFAM: protein of unknown function DUF1355; KEGG: ank:AnaeK_2645 protein of unknown function DUF1355.
  
     0.449
Plim_1047
PFAM: transposase IS4 family protein; KEGG: pol:Bpro_1661 transposase, IS4 family.
  
     0.446
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.