STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0796PFAM: peptidase A24A prepilin type IV; KEGG: sat:SYN_01490 flp pilus assembly protein, protease. (183 aa)    
Predicted Functional Partners:
Plim_0795
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: vpa:VP2420 putative pilus assembly protein.
 
  
 0.921
Plim_1917
PFAM: type II secretion system protein; KEGG: pca:Pcar_1753 Flp pilus assembly protein TadB.
 
  
 0.870
Plim_0793
PFAM: response regulator receiver; KEGG: ppd:Ppro_2701 response regulator receiver protein.
 
  
 0.856
Plim_1814
PFAM: type II secretion system protein; KEGG: rso:RSc0651 putative tight adherence TadB- related transmembrane protein.
 
  
 0.854
Plim_1817
TIGRFAM: Flp pilus assembly protein CpaB; KEGG: reh:H16_A0718 flp pilus assembly protein.
 
  
 0.798
Plim_1916
PFAM: type II secretion system protein; KEGG: rso:RSc0650 putative tight adherence TadC- related transmembrane protein.
 
     0.759
Plim_0794
PFAM: type II and III secretion system protein; KEGG: dvl:Dvul_1112 type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.751
Plim_1813
PFAM: type II secretion system protein; KEGG: sat:SYN_01499 flp pilus assembly protein.
 
     0.732
Plim_1918
PFAM: type II secretion system protein E; KEGG: ppd:Ppro_2700 type II secretion system protein E.
 
     0.711
Plim_3839
Type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.703
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.