Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0824KEGG: scl:sce5903 hypothetical protein. (656 aa)    
Predicted Functional Partners:
Plim_0823
PFAM: protein of unknown function DUF58; KEGG: scl:sce0474 hypothetical protein.
 
    0.955
Plim_4003
Protein of unknown function DUF1355.
     0.801
Plim_1206
Hypothetical protein; KEGG: similar to Stretchin-Mlck CG18255-PA, isoform A.
 
     0.774
Plim_4004
ABC transporter related protein.
 
     0.753
Plim_4006
Extracellular solute-binding protein family 1.
 
     0.749
Plim_1164
KEGG: aba:Acid345_3256 magnesium protoporphyrin chelatase, putative.
  
 
 0.725
Plim_0255
Hypothetical protein.
  
     0.721
Plim_3013
ABC transporter related protein.
  
     0.681
Plim_2976
KEGG: bmn:BMA10247_2126 hypothetical protein.
  
     0.672
Plim_1726
Hypothetical protein; KEGG: sus:Acid_7102 putative xylan esterase.
  
     0.656
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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