Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_0866PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: bpt:Bpet4348 hypothetical protein. (1020 aa)    
Predicted Functional Partners:
Plim_3623
Protein of unknown function DUF162.
  
 
 0.885
Plim_3417
Protein of unknown function DUF162.
  
 
 0.788
Plim_0865
PFAM: thiamineS protein; KEGG: hypothetical protein.
     
 0.632
Plim_1960
PFAM: FAD dependent oxidoreductase; KEGG: pfl:PFL_0533 oxidoreductase, FAD-binding.
  
  
 0.603
Plim_1300
PFAM: glutamine cyclotransferase; KEGG: sus:Acid_7734 glutamine cyclotransferase.
    
   0.599
Plim_3862
NADH-quinone oxidoreductase, F subunit.
  
 0.570
Plim_0864
PFAM: molybdopterin biosynthesis MoaE protein; KEGG: bsu:BSU14300 molybdopterin converting factor (subunit 2).
     
 0.550
Plim_0647
KEGG: bha:BH3560 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
 
 0.533
Plim_2694
Glutamate synthase (NADH).
     
 0.527
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
  
 
 0.523
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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