STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0901PFAM: lipopolysaccharide kinase; KEGG: cja:CJA_0503 lipopolysaccharide core biosynthesis protein WaaP. (268 aa)    
Predicted Functional Partners:
Plim_0900
PFAM: glycosyl transferase group 1; KEGG: cvi:CV_0817 glycosyltransferase.
     0.944
Plim_0899
TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: glo:Glov_0772 lipopolysaccharide heptosyltransferase II.
 
    0.827
hldE
Cytidyltransferase-related domain protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
 
     0.793
Plim_1960
PFAM: FAD dependent oxidoreductase; KEGG: pfl:PFL_0533 oxidoreductase, FAD-binding.
  
     0.653
Plim_1055
PFAM: glycosyl transferase family 2; Methyltransferase type 12; Methyltransferase type 11; TPR repeat-containing protein; Methionine biosynthesis MetW protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gbm:Gbem_3740 glycosyl transferase family 2.
  
 
 0.539
Plim_3243
Hypothetical protein.
  
     0.505
Plim_3588
Endonuclease/exonuclease/phosphatase.
  
     0.495
Plim_4241
RDD domain containing protein.
  
     0.443
Plim_4053
Protein of unknown function DUF1080.
  
     0.441
Plim_2378
KEGG: hypothetical protein.
  
     0.434
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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