STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0903Squalene cyclase-like protein; KEGG: squalene-hopene-cyclase, putative; K06045 squalene-hopene cyclase. (697 aa)    
Predicted Functional Partners:
Plim_1904
KEGG: aba:Acid345_1740 squalene cyclase; TIGRFAM: squalene-hopene cyclase; squalene/oxidosqualene cyclase; PFAM: Prenyltransferase/squalene oxidase.
  
  
 
0.929
Plim_4048
Cycloartenol synthase-like protein.
  
  
  0.924
Plim_2915
Protein of unknown function DUF116.
 
  
 0.807
Plim_3361
Hopanoid biosynthesis associated radical SAM protein HpnH.
 
   
 0.781
Plim_3506
WD40-like protein repeat-like protein.
  
     0.763
Plim_0250
SMART: Pyrrolo-quinoline quinone; KEGG: cps:CPS_4249 outer membrane protein assembly complex subunit YfgL.
  
     0.760
Plim_0598
PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: son:SO_3309 outer membrane protein assembly complex subunit YfgL.
  
     0.757
Plim_2376
SMART: Pyrrolo-quinoline quinone; KEGG: mag:amb1343 WD-40 repeat-containing protein.
  
     0.756
Plim_0982
PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: acr:Acry_1741 pyrrolo-quinoline quinone.
  
     0.754
Plim_2733
Hypothetical protein.
  
     0.753
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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