STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0907PFAM: protein of unknown function DUF323; KEGG: sus:Acid_6144 hypothetical protein. (359 aa)    
Predicted Functional Partners:
Plim_0142
PFAM: protein of unknown function DUF323; KEGG: scl:sce6068 protein kinase.
  
     0.771
Plim_0037
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_2550 oxidoreductase domain- containing protein.
 
     0.712
Plim_0111
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_1336 putative streptomycin biosynthesis protein StrI.
 
     0.689
Plim_1207
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_6145 oxidoreductase domain- containing protein.
  
     0.653
Plim_0906
Hypothetical protein.
       0.538
Plim_0821
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: bcr:BCAH187_A3910 serine/threonine protein kinase.
 
 
    0.524
Plim_0905
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
     0.493
Plim_2753
Serine/threonine protein kinase-related protein.
 
 
    0.484
Plim_4042
Serine/threonine protein kinase-related protein.
 
 
    0.466
Plim_0029
KEGG: sus:Acid_3123 putative heme-binding protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module.
  
     0.459
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.