Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
Plim_0917PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: pca:Pcar_1256 dehydrogenase. (359 aa)    
Predicted Functional Partners:
Plim_0836
Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: dol:Dole_1884 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
    0.900
Plim_2359
PFAM: protein of unknown function DUF1009; KEGG: sfu:Sfum_3750 protein of unknown function DUF1009.
      0.894
Plim_0918
acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
     0.850
Plim_3234
Oxidoreductase domain protein.
  
     0.740
Plim_2996
Oxidoreductase domain protein.
  
     0.738
Plim_3765
Oxidoreductase domain protein; KEGG: Hypothetical protein CBG16424.
  
     0.716
Plim_2763
DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
    0.669
Plim_3712
Oxidoreductase domain protein; KEGG: Srrm2; serine/arginine repetitive matrix 2.
  
     0.629
Plim_1283
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_4454 oxidoreductase domain- containing protein.
  
     0.627
Plim_0943
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
     0.622
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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