Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rpmE2TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: bph:Bphy_0947 ribosomal protein L31. (85 aa)    
Predicted Functional Partners:
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
 
 0.989
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.988
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.987
rpsP
TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: amc:MADE_01705 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.987
rpmF
Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.987
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.985
rpmB
TIGRFAM: ribosomal protein L28; KEGG: dvu:DVU1211 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.985
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
 0.984
rpmA
TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: bbk:BARBAKC583_0310 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.983
rpmG
TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: cju:C8J_0444 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.983
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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