STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0930Hypothetical protein; KEGG: dal:Dalk_3255 4-amino-4-deoxy-L-arabinose transferase. (629 aa)    
Predicted Functional Partners:
Plim_2932
Hypothetical protein.
  
     0.606
Plim_0931
PFAM: Protein of unknown function DUF1592; Protein of unknown function DUF1588; Protein of unknown function DUF1587; Protein of unknown function DUF1595; protein of unknown function DUF1585; KEGG: sus:Acid_2097 hypothetical protein.
       0.547
Plim_3656
Protein of unknown function DUF1559.
  
     0.519
Plim_3885
O-antigen polymerase; KEGG: proteophosphoglycan ppg4.
  
     0.515
Plim_2901
Protein of unknown function DUF1559.
  
     0.490
Plim_3766
Hypothetical protein.
  
     0.471
Plim_4208
Tetratricopeptide TPR_2 repeat protein.
  
     0.463
Plim_3408
KEGG: azo:azo2666 hypothetical protein.
  
     0.454
Plim_4235
Protein of unknown function DUF1559.
  
     0.448
Plim_3424
SCP-like extracellular.
  
     0.442
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.