STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_0953PFAM: GH3 auxin-responsive promoter; KEGG: mxa:MXAN_7125 hypothetical protein. (586 aa)    
Predicted Functional Partners:
Plim_1279
Lysophospholipase-like protein; KEGG: dac:Daci_6038 alpha/beta hydrolase fold.
  
     0.562
Plim_0206
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: dal:Dalk_2037 NAD-dependent epimerase/dehydratase.
  
     0.475
Plim_2715
Mandelate racemase/muconate lactonizing protein.
  
     0.431
Plim_0937
PFAM: YTV domain protein; KEGG: hypothetical protein LOC680468.
  
     0.421
Plim_3438
Dipeptidyl aminopeptidase/acylaminoacyl- peptidase-like protein.
  
     0.421
Plim_0952
Hypothetical protein.
       0.414
Plim_0954
Hypothetical protein.
       0.401
Plim_4107
Hypothetical protein.
  
     0.401
rpmC
TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: rce:RC1_0719 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
     0.400
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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