STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1001PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: glo:Glov_0231 ABC transporter related. (298 aa)    
Predicted Functional Partners:
Plim_1002
PFAM: protein of unknown function DUF214; KEGG: ank:AnaeK_3254 protein of unknown function DUF214.
 
   0.935
Plim_1000
KEGG: bav:BAV0798 exported protein.
       0.651
Plim_2519
PFAM: AAA ATPase central domain protein; KEGG: AAA family ATPase, putative.
  
     0.609
Plim_0768
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce0659 sodium ABC transporter ATP- binding protein.
  
     0.607
Plim_3013
ABC transporter related protein.
  
     0.597
Plim_0127
PFAM: protein of unknown function DUF214; KEGG: saz:Sama_1472 ABC transporter permease protein.
 
 0.559
pheS
TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: shl:Shal_1812 phenylalanyl-tRNA synthetase subunit alpha; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
 
 
   0.553
Plim_4004
ABC transporter related protein.
  
    0.552
Plim_3659
Protein of unknown function DUF214; KEGG: eba:ebA7253 hypothetical protein.
  
   0.535
Plim_2518
PFAM: protein of unknown function DUF214; KEGG: glo:Glov_0758 lipoprotein releasing system, transmembrane protein, LolC/E family.
  
   0.532
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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