STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1002PFAM: protein of unknown function DUF214; KEGG: ank:AnaeK_3254 protein of unknown function DUF214. (700 aa)    
Predicted Functional Partners:
Plim_1001
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: glo:Glov_0231 ABC transporter related.
 
   0.935
Plim_1000
KEGG: bav:BAV0798 exported protein.
  
    0.665
Plim_0607
Hypothetical protein; KEGG: GJ15014 gene product from transcript GJ15014- RA.
  
     0.599
Plim_0513
Hypothetical protein; KEGG: amc:MADE_03505 possible biopolymer transport protein, ExbB family.
  
     0.583
Plim_3614
CMP/dCMP deaminase zinc-binding protein.
  
     0.576
Plim_1003
KEGG: mgm:Mmc1_1133 protein of unknown function DUF323.
  
    0.536
Plim_1780
KEGG: mxa:MXAN_1392 hypothetical protein.
  
     0.502
Plim_1416
PFAM: protein of unknown function DUF1355; KEGG: ank:AnaeK_2645 protein of unknown function DUF1355.
  
     0.454
Plim_0999
KEGG: hypothetical protein.
       0.449
Plim_0034
Biotin apo-protein ligase-related protein; KEGG: hypothetical protein.
  
     0.431
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.