STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1010Trypsin-like protein serine protease typically periplasmic containing C-terminal PDZ domain; KEGG: HTRA2; HtrA serine peptidase 2; K08669 HtrA serine peptidase 2. (365 aa)    
Predicted Functional Partners:
Plim_1011
Hypothetical protein; KEGG: hne:HNE_2881 alpha/beta fold family hydrolase.
       0.773
Plim_1811
PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: mxa:MXAN_4330 periplasmic serine protease, DO/DeqQ family.
  
     0.761
Plim_1379
KEGG: gbe:GbCGDNIH1_1490 endopeptidase DegP; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein.
  
     0.748
Plim_2347
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: gme:Gmet_3052 peptidase S1C, HrtA/DegP2/Q/S.
  
     0.748
Plim_1810
PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: nma:NMA0710 putative periplasmic serine protease.
  
     0.746
Plim_1809
PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; KEGG: protease Do precursor.
  
     0.745
Plim_1243
HtrA2 peptidase; KEGG: dvl:Dvul_1611 protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein.
  
     0.737
Plim_2015
KEGG: noc:Noc_1396 peptidase S1 and S6, chymotrypsin/Hap; PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein.
  
     0.734
Plim_3737
Peptidase S1 and S6 chymotrypsin/Hap.
  
     0.734
Plim_2552
PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: ilo:IL0411 periplasmic trypsin-like serine protease.
  
     0.732
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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