STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1011Hypothetical protein; KEGG: hne:HNE_2881 alpha/beta fold family hydrolase. (329 aa)    
Predicted Functional Partners:
Plim_3862
NADH-quinone oxidoreductase, F subunit.
   
 
 0.855
Plim_3860
NADH dehydrogenase (ubiquinone) 24 kDa subunit.
   
   0.830
Plim_3863
Ferredoxin.
   
 
 0.798
Plim_1010
Trypsin-like protein serine protease typically periplasmic containing C-terminal PDZ domain; KEGG: HTRA2; HtrA serine peptidase 2; K08669 HtrA serine peptidase 2.
       0.773
Plim_0937
PFAM: YTV domain protein; KEGG: hypothetical protein LOC680468.
  
     0.761
Plim_3429
Transport-associated protein.
  
     0.760
Plim_0336
Hypothetical protein; KEGG: sat:SYN_00815 dolichyl-phosphate-mannose- protein mannosyltransferase proteins.
  
     0.757
Plim_2201
KEGG: bja:blr0521 hypothetical protein.
  
    0.751
Plim_2316
Hypothetical protein; KEGG: nmu:Nmul_A0278 glycosyl transferase family protein.
  
     0.747
Plim_3249
Hypothetical protein.
  
     0.743
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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