STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1066KEGG: gur:Gura_4041 hypothetical protein. (578 aa)    
Predicted Functional Partners:
Plim_1065
KEGG: gur:Gura_4040 hypothetical protein.
     0.994
Plim_2260
PFAM: cytochrome P450; KEGG: bha:BH0579 cytochrome P450 hydroxylase.
    
  0.718
Plim_0731
SMART: nuclear protein SET; SET-related domain protein; KEGG: similar to nuclear receptor binding SET domain protein 1 isoform b; K11424 histone-lysine N- methyltransferase NSD1/2.
    
 0.642
Plim_3500
Histone deacetylase.
    
 
 0.520
Plim_1067
Hypothetical protein.
       0.480
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
     
 0.467
Plim_1451
PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: sus:Acid_5038 WD-40 repeat-containing protein.
   
 
 0.438
Plim_1063
PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: helicase domain protein; DEAD-like helicase; KEGG: dno:DNO_0173 DEAD-DEAH box helicase domain- containing protein VrlS.
       0.429
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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