Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
Plim_1090PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: ank:AnaeK_0302 AAA ATPase central domain protein. (501 aa)    
Predicted Functional Partners:
Plim_3500
Histone deacetylase.
   
 0.838
Plim_1451
PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: sus:Acid_5038 WD-40 repeat-containing protein.
 
 
 
 0.774
Plim_2199
PFAM: conserved hypothetical protein; KEGG: pag:PLES_49631 hypothetical protein.
    
 
 0.732
Plim_1895
TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: bca:BCE_A0165 MIP family channel protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.718
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
 
 0.705
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
  0.699
Plim_2519
PFAM: AAA ATPase central domain protein; KEGG: AAA family ATPase, putative.
  
 
  0.621
Plim_2087
PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: afw:Anae109_0777 protein phosphatase 2C-like protein.
   
   0.592
Plim_2397
PFAM: Protein phosphatase 2C-like; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: pna:Pnap_3950 protein phosphatase 2C domain protein.
   
   0.592
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
    
 0.518
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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