STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1170Hypothetical protein; KEGG: GA14075 gene product from transcript GA14075- RA. (586 aa)    
Predicted Functional Partners:
Plim_2063
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: ppw:PputW619_3408 cell divisionFtsK/SpoIIIE.
    
 
 0.573
Plim_1171
PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: hypothetical protein; K00362 nitrite reductase (NAD(P)H) large subunit.
       0.556
Plim_1169
Hypothetical protein; KEGG: nar:Saro_0702 zinc finger/thioredoxin putative.
       0.512
Plim_1172
Hypothetical protein.
       0.426
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.