Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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Plim_1188TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: afr:AFE_0465 cation efflux family protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (322 aa)    
Predicted Functional Partners:
surE
Stationary-phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
       0.786
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
    0.686
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
    0.686
Plim_1746
PFAM: Lactate/malate dehydrogenase; KEGG: aba:Acid345_1483 malate dehydrogenase (NAD); Belongs to the LDH/MDH superfamily.
  
    0.686
Plim_0087
KEGG: oan:Oant_3233 heavy metal translocating P- type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; YHS domain protein; Haloacid dehalogenase domain protein hydrolase; SMART: TRASH domain protein.
 
 
 0.495
Plim_2694
Glutamate synthase (NADH).
     
 0.469
Plim_0678
Ammonium transporter; KEGG: pla:Plav_1427 integral membrane sensor signal transduction histidine kinase; TIGRFAM: ammonium transporter; PAS sensor protein; PFAM: Rh family protein/ammonium transporter; ATP- binding region ATPase domain protein; Hpt domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein.
 
  
 0.451
Plim_2609
Cation diffusion facilitator family transporter.
 
 
 
 0.410
Plim_1992
PFAM: ABC-3 protein; iron dependent repressor; SMART: iron dependent repressor; KEGG: rce:RC1_2462 zinc transport system membrane protein TroD.
     
 0.402
Plim_1993
PFAM: ABC-3 protein; iron dependent repressor; KEGG: rce:RC1_2461 zinc transport system membrane protein TroC.
     
 0.402
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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