Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Plim_1190PFAM: protein of unknown function DUF147; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: ade:Adeh_2555 hypothetical protein. (456 aa)    
Predicted Functional Partners:
Plim_3476
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; KEGG: bcm:Bcenmc03_2554 hypothetical protein.
 
 
 
 0.868
Plim_1316
PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: Phosphoglucomutase/phosphomannomutase, C- terminal domain containing protein; K01840 phosphomannomutase.
   
 
 0.830
Plim_3603
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I.
   
 
 0.830
Plim_1189
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bxe:Bxe_C1347 putative mandelate racemase/muconate lactonizing enzyme.
     
 0.613
Plim_3740
KpsF/GutQ family protein.
  
  
 0.517
Plim_0757
PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; KEGG: dol:Dole_0855 sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
   
 
 0.515
Plim_0360
TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: dar:Daro_4083 phosphoryl transfer system, HPr.
 
  
 0.511
Plim_3243
Hypothetical protein.
  
     0.508
Plim_1107
TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: glo:Glov_3612 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
     
 0.497
Plim_0926
KEGG: hypothetical protein.
  
     0.487
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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