Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1206Hypothetical protein; KEGG: similar to Stretchin-Mlck CG18255-PA, isoform A. (546 aa)    
Predicted Functional Partners:
Plim_4004
ABC transporter related protein.
 
     0.786
Plim_4003
Protein of unknown function DUF1355.
 
     0.785
Plim_4006
Extracellular solute-binding protein family 1.
 
     0.785
Plim_2976
KEGG: bmn:BMA10247_2126 hypothetical protein.
  
 
   0.777
Plim_0824
KEGG: scl:sce5903 hypothetical protein.
 
     0.774
Plim_0937
PFAM: YTV domain protein; KEGG: hypothetical protein LOC680468.
  
     0.738
Plim_4085
ABC-type Co2+ transport system periplasmic component-like protein.
  
     0.718
Plim_3408
KEGG: azo:azo2666 hypothetical protein.
  
     0.680
Plim_3270
KEGG: mxa:MXAN_0067 hypothetical protein.
  
     0.670
Plim_1666
PFAM: isochorismatase hydrolase; KEGG: sus:Acid_1892 isochorismatase hydrolase.
  
     0.664
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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