Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_1210TIGRFAM: conserved repeat domain protein; KEGG: conserved repeat domain precursor. (617 aa)    
Predicted Functional Partners:
Plim_0641
KEGG: SNF2 superfamily protein; Belongs to the bacterial secretin family.
  
    0.761
Plim_3847
Glycoside hydrolase family 10.
  
     0.738
Plim_0727
KEGG: aba:Acid345_2357 hypothetical protein.
  
     0.734
Plim_2824
Protein of unknown function DUF1559.
  
     0.707
Plim_1543
KEGG: hypothetical protein; K03785 3-dehydroquinate dehydratase I.
  
     0.704
Plim_0602
PFAM: RNA polymerase alpha subunit domain protein; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dol:Dole_1087 TPR repeat-containing protein.
 
 
 
 0.648
Plim_3429
Transport-associated protein.
  
     0.647
Plim_1805
Hypothetical protein.
  
     0.634
Plim_0304
PFAM: protein of unknown function DUF1559; KEGG: sus:Acid_5705 Tfp pilus assembly protein PilE- like protein.
  
     0.620
Plim_2436
PFAM: O-antigen polymerase; KEGG: spe:Spro_4678 O-antigen polymerase.
  
     0.620
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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