STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1243HtrA2 peptidase; KEGG: dvl:Dvul_1611 protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein. (453 aa)    
Predicted Functional Partners:
Plim_1010
Trypsin-like protein serine protease typically periplasmic containing C-terminal PDZ domain; KEGG: HTRA2; HtrA serine peptidase 2; K08669 HtrA serine peptidase 2.
  
     0.737
thiL
Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
       0.479
Plim_2762
PAS sensor protein.
  
  
 0.461
Plim_2519
PFAM: AAA ATPase central domain protein; KEGG: AAA family ATPase, putative.
    
  0.438
leuS
leucyl-tRNA synthetase; KEGG: proteophosphoglycan ppg4; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.427
Plim_3061
ATP-binding region ATPase domain protein.
  
  
 0.401
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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