STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1253Carbonic anhydrase/acetyltransferase isoleucine patch superfamily-like protein; KEGG: pen:PSEEN4268 transferase family protein. (190 aa)    
Predicted Functional Partners:
Plim_1373
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; PFAM: ribulose bisphosphate carboxylase large chain; Cupin 2 conserved barrel domain protein; KEGG: predicted protein.
   
 
 0.838
Plim_2571
Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
    
 
 0.745
Plim_2716
Carbonic anhydrase.
    
 
 0.745
Plim_3696
Carbonic anhydrase.
    
 
 0.745
Plim_3834
Putative GAF sensor protein; KEGG: GD15883 gene product from transcript GD15883- RA.
      0.701
pgk
PFAM: phosphoglycerate kinase; KEGG: hypothetical protein; K00927 phosphoglycerate kinase.
       0.544
Plim_1254
KEGG: hne:HNE_0811 hypothetical protein.
       0.497
Plim_3678
Hypothetical protein.
    
 
 0.473
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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