Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1274KEGG: scl:sce4409 hypothetical protein. (359 aa)    
Predicted Functional Partners:
Plim_4048
Cycloartenol synthase-like protein.
  
     0.774
Plim_0838
PFAM: protein of unknown function DUF1355; KEGG: sus:Acid_6438 hypothetical protein.
 
     0.773
Plim_1449
KEGG: sus:Acid_5040 hypothetical protein.
  
     0.768
Plim_4194
Tetratricopeptide TPR_2 repeat protein.
  
     0.751
Plim_3635
Conserved hypothetical protein.
  
     0.743
Plim_0839
ATPase-like protein involved in DNA repair; KEGG: liver stage antigen.
  
     0.737
Plim_1450
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5039 hypothetical protein.
  
     0.737
Plim_3452
Hypothetical protein.
  
     0.737
Plim_4208
Tetratricopeptide TPR_2 repeat protein.
  
     0.716
Plim_1416
PFAM: protein of unknown function DUF1355; KEGG: ank:AnaeK_2645 protein of unknown function DUF1355.
  
     0.715
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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