Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1278KEGG: dps:DP1707 hypothetical protein. (326 aa)    
Predicted Functional Partners:
Plim_3312
4Fe-4S ferredoxin iron-sulfur binding domain protein.
  
     0.657
Plim_0043
KEGG: hypothetical protein.
  
     0.586
Plim_2915
Protein of unknown function DUF116.
 
     0.586
Plim_3304
MscS Mechanosensitive ion channel.
 
    0.553
Plim_1806
Hypothetical protein; KEGG: sushi-domain containing secreted protein; with a signal peptide, low complexity region followed by a sushi domain.
  
     0.512
Plim_1277
PFAM: Colicin V production protein; KEGG: rfr:Rfer_2684 colicin V production protein.
       0.503
Plim_3506
WD40-like protein repeat-like protein.
  
     0.460
Plim_2178
PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; putative RNA methylase; KEGG: ppr:PBPRA0819 methyltransferase; Belongs to the methyltransferase superfamily.
  
     0.458
Plim_2482
KEGG: aeh:Mlg_1600 hypothetical protein.
  
     0.446
Plim_1279
Lysophospholipase-like protein; KEGG: dac:Daci_6038 alpha/beta hydrolase fold.
       0.438
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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