Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xylAKEGG: bsu:BSU17600 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family. (437 aa)    
Predicted Functional Partners:
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: sus:Acid_0804 xylulokinase.
 
 
 0.963
Plim_1998
PFAM: PfkB domain protein; KEGG: aba:Acid345_1054 sugar kinase, ribokinase family.
     
 0.907
Plim_1388
PFAM: ROK family protein; KEGG: bcr:BCAH187_A4396 glucokinase.
    
 0.834
Plim_2404
PFAM: ROK family protein; KEGG: ftn:FTN_0618 ROK family protein.
    
 0.834
Plim_2801
Helix-turn-helix- domain containing protein AraC type.
 
   
 0.442
Plim_1288
Hypothetical protein.
       0.437
Plim_0774
PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: hiq:CGSHiGG_09180 xylose operon regulatory protein.
 
   
 0.433
Plim_3035
Helix-turn-helix- domain containing protein AraC type; KEGG: proteophosphoglycan 5.
 
   
 0.429
Plim_3906
Helix-turn-helix- domain containing protein AraC type; KEGG: proteophosphoglycan 5.
 
   
 0.406
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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