STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1297PFAM: cytochrome c assembly protein; KEGG: pca:Pcar_3065 cytochrome c biogenesis protein. (298 aa)    
Predicted Functional Partners:
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
       0.817
Plim_2805
Outer membrane efflux protein.
  
     0.675
Plim_2435
PFAM: protein of unknown function DUF1573; KEGG: gur:Gura_3399 hypothetical protein.
  
     0.586
Plim_1459
KEGG: Hypothetical protein CBG02561.
  
     0.567
Plim_4206
Xylose isomerase domain protein TIM barrel.
  
     0.545
Plim_2365
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: rty:RT0150 outer membrane protein Omp1.
  
     0.544
Plim_0030
PFAM: protein of unknown function DUF164; KEGG: dol:Dole_2149 hypothetical protein.
  
     0.540
Plim_0090
Conserved hypothetical protein; KEGG: outer membrane efflux protein.
  
     0.536
Plim_0937
PFAM: YTV domain protein; KEGG: hypothetical protein LOC680468.
  
     0.535
Plim_2959
Cytochrome c class I.
  
     0.519
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.