Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1303KEGG: bbr:BB0753 coenzyme A ligase. (437 aa)    
Predicted Functional Partners:
Plim_3113
Amino acid-binding ACT domain protein.
 
   0.794
Plim_0909
KEGG: afw:Anae109_0040 amino acid-binding ACT domain-containing protein.
 
   0.789
Plim_3882
CapK related-protein; KEGG: proteophosphoglycan ppg4.
  
     0.773
Plim_3326
Aldehyde Dehydrogenase.
  
 
   0.666
Plim_1978
Hypothetical protein; KEGG: msl:Msil_3733 pyrrolo-quinoline quinone.
  
     0.556
Plim_2733
Hypothetical protein.
  
     0.552
Plim_3329
Conserved hypothetical protein.
  
     0.548
Plim_0250
SMART: Pyrrolo-quinoline quinone; KEGG: cps:CPS_4249 outer membrane protein assembly complex subunit YfgL.
  
     0.520
Plim_2376
SMART: Pyrrolo-quinoline quinone; KEGG: mag:amb1343 WD-40 repeat-containing protein.
  
     0.518
Plim_0100
PFAM: protein of unknown function DUF214; KEGG: ade:Adeh_2042 hypothetical protein.
  
     0.508
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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