STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1306PFAM: Forkhead-associated protein; KEGG: hypothetical protein; K03497 chromosome partitioning protein, ParB family. (1164 aa)    
Predicted Functional Partners:
Plim_3408
KEGG: azo:azo2666 hypothetical protein.
  
     0.765
Plim_1806
Hypothetical protein; KEGG: sushi-domain containing secreted protein; with a signal peptide, low complexity region followed by a sushi domain.
  
     0.719
Plim_2082
KEGG: Hypothetical protein CBG02561.
  
     0.708
Plim_1683
Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.670
Plim_1805
Hypothetical protein.
  
 
 
 0.651
Plim_3319
Similar to plant photosystem II stability/assembly factor.
  
     0.644
Plim_2314
Hypothetical protein; KEGG: GA28568 gene product from transcript GA28568- RA.
  
     0.637
Plim_2836
KEGG: hypothetical protein LOC714502.
  
     0.628
Plim_0641
KEGG: SNF2 superfamily protein; Belongs to the bacterial secretin family.
  
     0.588
Plim_2465
PFAM: major facilitator superfamily MFS_1; KEGG: pca:Pcar_2468 putative transport protein.
  
     0.575
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.